aws omics
Amazon Web Services HealthOmics is a service that helps users such as bioinformaticians, researchers, and scientists to store, query, analyze, and generate insights from genomics and other biological data. AWS CLI reference
107 commands Its page in the AWS CLI reference
Commands
abort-multipart-read-set-uploadStops a multipart read set upload into a sequence store and returns a response with no body if the operation is successful.accept-shareAccept a resource share request.batch-delete-read-setDeletes one or more read sets.cancel-annotation-import-jobAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.cancel-runCancels a run using its ID and returns a response with no body if the operation is successful.cancel-run-batchCancels all runs within a specified batch.cancel-variant-import-jobAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.complete-multipart-read-set-uploadCompletes a multipart read set upload into a sequence store after you have initiated the upload process with CreateMultipartReadSetUpload and uploaded all read set parts using UploadReadSetPart.create-annotation-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.create-annotation-store-versionCreates a new version of an annotation store.create-configurationCreate a new configuration.create-multipart-read-set-uploadInitiates a multipart read set upload for uploading partitioned source files into a sequence store.create-reference-storeCreates a reference store and returns metadata in JSON format.create-run-cacheCreates a run cache to store and reference task outputs from completed private runs.create-run-groupCreates a run group to limit the compute resources for the runs that are added to the group.create-sequence-storeCreates a sequence store and returns its metadata.create-shareCreates a cross-account shared resource.create-variant-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.create-workflowCreates a private workflow.create-workflow-versionCreates a new workflow version for the workflow that you specify with the workflowId parameter.delete-annotation-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.delete-annotation-store-versionsDeletes one or multiple versions of an annotation store.delete-batchDeletes a run batch resource and its associated metadata.delete-configurationDelete an existing configuration.delete-referenceDeletes a reference genome and returns a response with no body if the operation is successful.delete-reference-storeDeletes a reference store and returns a response with no body if the operation is successful.delete-runDeletes a run and returns a response with no body if the operation is successful.delete-run-batchDeletes the individual workflow runs within a batch.delete-run-cacheDeletes a run cache and returns a response with no body if the operation is successful.delete-run-groupDeletes a run group and returns a response with no body if the operation is successful.delete-s3-access-policyDeletes an access policy for the specified store.delete-sequence-storeDeletes a sequence store and returns a response with no body if the operation is successful.delete-shareDeletes a resource share.delete-variant-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.delete-workflowDeletes a workflow by specifying its ID.delete-workflow-versionDeletes a workflow version.get-annotation-import-jobAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.get-annotation-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.get-annotation-store-versionRetrieves the metadata for an annotation store version.get-batchRetrieves details and current status for a specific run batch, including submission progress and run execution counts.get-configurationRetrieve configuration details for specified name.get-read-setRetrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.get-read-set-activation-jobReturns detailed information about the status of a read set activation job in JSON format.get-read-set-export-jobRetrieves status information about a read set export job and returns the data in JSON format.get-read-set-import-jobGets detailed and status information about a read set import job and returns the data in JSON format.get-read-set-metadataRetrieves the metadata for a read set from a sequence store in JSON format.get-referenceDownloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.get-reference-import-jobMonitors the status of a reference import job.get-reference-metadataRetrieves metadata for a reference genome.get-reference-storeGets information about a reference store.get-runGets detailed information about a specific run using its ID.get-run-cacheRetrieves detailed information about the specified run cache using its ID.get-run-groupGets information about a run group and returns its metadata.get-run-taskGets detailed information about a run task using its ID.get-s3-access-policyRetrieves details about an access policy on a given store.get-sequence-storeRetrieves metadata for a sequence store using its ID and returns it in JSON format.get-shareRetrieves the metadata for the specified resource share.get-variant-import-jobAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.get-variant-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.get-workflowGets all information about a workflow using its ID.get-workflow-versionGets information about a workflow version.list-annotation-import-jobsAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.list-annotation-store-versionsLists the versions of an annotation store.list-annotation-storesAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.list-batchReturns a list of run batches in your account, with optional filtering by status, name, or run group.list-configurationsList all configurations for the account.list-multipart-read-set-uploadsLists in-progress multipart read set uploads for a sequence store and returns it in a JSON formatted output.list-read-set-activation-jobsRetrieves a list of read set activation jobs and returns the metadata in a JSON formatted output.list-read-set-export-jobsRetrieves a list of read set export jobs in a JSON formatted response.list-read-set-import-jobsRetrieves a list of read set import jobs and returns the data in JSON format.list-read-set-upload-partsLists all parts in a multipart read set upload for a sequence store and returns the metadata in a JSON formatted output.list-read-setsRetrieves a list of read sets from a sequence store ID and returns the metadata in JSON format.list-reference-import-jobsRetrieves the metadata of one or more reference import jobs for a reference store.list-reference-storesRetrieves a list of reference stores linked to your account and returns their metadata in JSON format.list-referencesRetrieves the metadata of one or more reference genomes in a reference store.list-run-cachesRetrieves a list of your run caches and the metadata for each cache.list-run-groupsRetrieves a list of all run groups and returns the metadata for each run group.list-run-tasksReturns a list of tasks and status information within their specified run.list-runsRetrieves a list of runs and returns each run's metadata and status.list-runs-in-batchReturns a paginated list of individual workflow runs within a specific batch.list-sequence-storesRetrieves a list of sequence stores and returns each sequence store's metadata.list-sharesRetrieves the resource shares associated with an account.list-tags-for-resourceRetrieves a list of tags for a resource.list-variant-import-jobsAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.list-variant-storesAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.list-workflow-versionsLists the workflow versions for the specified workflow.list-workflowsRetrieves a list of existing workflows.put-s3-access-policyAdds an access policy to the specified store.start-annotation-import-jobAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.start-read-set-activation-jobActivates an archived read set and returns its metadata in a JSON formatted output.start-read-set-export-jobStarts a read set export job.start-read-set-import-jobImports a read set from the sequence store.start-reference-import-jobImports a reference genome from Amazon S3 into a specified reference store.start-runStarts a new run and returns details about the run, or duplicates an existing run.start-run-batchStarts a batch of workflow runs.start-variant-import-jobAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.tag-resourceTags a resource.untag-resourceRemoves tags from a resource.update-annotation-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.update-annotation-store-versionUpdates the description of an annotation store version.update-run-cacheUpdates a run cache using its ID and returns a response with no body if the operation is successful.update-run-groupUpdates the settings of a run group and returns a response with no body if the operation is successful.update-sequence-storeUpdate one or more parameters for the sequence store.update-variant-storeAmazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers.update-workflowUpdates information about a workflow.update-workflow-versionUpdates information about the workflow version.upload-read-set-partUploads a specific part of a read set into a sequence store.