CmdID

CmdID / aws / aws omics

aws omics start-annotation-import-job

Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. AWS CLI reference

1 example 7 options Its page in the AWS CLI reference

Opens CmdID with your command. It is read in your browser and sent nowhere.

Examples

from aws-cli, each command read by CmdID

To import annotations

The following start-annotation-import-job example imports annotations from Amazon S3.

aws omics start-annotation-import-job --destination-name tsv_ann_store --no-run-left-normalization --role-arn arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ --items source=s3://amzn-s3-demo-bucket/targetedregions.bed.gzIdentify
--destination-nameA destination annotation store for the job.
--no-run-left-normalizationThe job's left normalization setting.
--role-arnA service role for the job.
--itemsItems to import.
Its output
{
    "jobId": "a1b2c3d4-5678-90ab-cdef-EXAMPLE11111"
}

For more information, see Omics Analytics in the Amazon Omics Developer Guide.

Options

7 in the AWS CLI reference
--annotation-fieldsThe annotation schema generated by the parsed annotation data.
--destination-nameA destination annotation store for the job.
--format-optionsFormatting options for the annotation file.
--itemsItems to import.
--role-arnA service role for the job.
--run-left-normalizationThe job's left normalization setting.
--version-nameThe name of the annotation store version.